#!/bin/bash

echo "NSC;pka;H-ID;H-charge;O-ID;O-charge;C1-ID;C1-charge" > m-charges.csv; ~/analyze -c m >> m-charges.csv
echo "NSC;pka;H-ID;H-charge;O-ID;O-charge;C1-ID;C1-charge" > e-charges.csv; ~/analyze -c e >> e-charges.csv
echo "NSC;pka;H-ID;H-charge;O-ID;O-charge;C1-ID;C1-charge" > n-charges.csv; ~/analyze -c n >> n-charges.csv

cat /home/bates/list_ch | while read i
do
	~/statistics.pl -i $i | R --no-save > $i.Rlog
	mv Rplots.pdf $i.pdf
	extract_statistics.pl < $i.Rlog > $i.R
done
cd ..
